BridgeDb app: unifying identifier mapping services for Cytoscape

BridgeDb app: unifying identifier mapping services for Cytoscape

The BridgeDb app for Cytoscape allows users to map and annotate identifiers of genes, proteins and metabolites in the context of biological networks. The app greatly simplifies the identifier mapping process in Cytoscape by providing a unified interface to different mapping resources and services. The app also provides a programming interface via Cytoscape Commands that can be utilized for iden...

An R package with BridgeDb for identifier mapping

Cytoscape App Store

SUMMARY Cytoscape is an open source software tool for biological network visualization and analysis, which can be extended with independently developed apps. We launched the Cytoscape App Store to highlight the important features that apps add to Cytoscape, enable researchers to find and install apps they need and help developers promote their apps. AVAILABILITY The App Store is available at ...

WikiPathways App for Cytoscape: Making biological pathways

In this paper we present the open-source WikiPathways app for Cytoscape ( ) that can be used to import http://apps.cytoscape.org/apps/wikipathways biological pathways for data visualization and network analysis. WikiPathways is an open, collaborative biological pathway database that provides fully annotated pathway diagrams for manual download or through web services. The WikiPathways app allow...

The Cytoscape app article collection

As a network visualization and analysis platform, Cytoscape relies on apps to provide domain-specific features and functions. There are many resources available to support Cytoscape app development and distribution, including the Cytoscape App Store and an online "cookbook" for app developers. This article collection is another resource to help researchers find out more about relevant Cytoscape...